Title
Interaction of the minocycline with extracelluar protein and intracellular protein by multi-spectral techniques and molecular docking
Author
Qing Fang, Yirun Wang, Taoying Hu, Ying Liu
Year
2016
Journal
Journal of Molecular Structure
Abstract
The interaction of minocyeline (MNC) with extracelluar protein (lysozyme, LYSO) or intracellular protein (bovine hemoglobin, BHb) was investigated using multi-spectral techniques and molecular docking in vitro. Fluorescence studies suggested that MNC quenched LYSO/BHb fluorescence in a static mode with binding constants of 2.01 and 0.26 × 104 L mol−1 at 298 K, respectively. The LYZO−MNC system was more easily influenced by temperature (298 and 310 K) than the BHb−MNC system. The thermodynamic parameters demonstrated that hydrogen bonds and van der Waals forces played the major role in the binding process. Based on the Förster theory of nonradiative energy transfer, the binding distances between MNC and the inner tryptophan residues of LYSO and BHb were calculated to be 4.34 and 3.49 nm, respectively. Furthermore, circular dichroism spectra (CD), Fourier transforms infrared (FTIR), UV–vis, and three-dimensional fluorescence spectra results indicated the secondary structures of LYSO and BHb were partially destroyed by MNC with the α-helix percentage of LYZO−MNC increased (17.8–28.6%) while that of BHb−MNC was decreased (41.6–39.6%). UV–vis spectral results showed these binding interactions could cause conformational and some micro-environmental changes of LYSO and BHb. In accordance with the results of molecular docking, In LYZO-MNC system, MNC was mainly bound in the active site hinge region where Trp-62 and Trp-63 are located, and in MNC-BHb system, MNC was close to the subunit α 1 of BHb. molecular docking analysis supported the thermodynamic results well. The work contributes to clarify the mechanism of MNC with two proteins at molecular level.
Instrument
J-815
Keywords
Circular dichroism, Secondary structure, Ligand binding, Biochemistry